{ "_id": "6aaf84ba3d719c1f8407e55b", "Package": "odeGUTS", "Title": "Solve ODE for GUTS-RED-SD and GUTS-RED-IT Using Compiled Code", "Version": "1.1.0", "Authors@R": "c(\nperson(given = \"Benoit\",\nfamily = \"Goussen\",\nrole = c(\"aut\"),\nemail = \"benoit.goussen@ibacon.com\",\ncomment = c(ORCID = \"0000-0001-7204-7981\")),\nperson(given = \"Carlo\",\nfamily = \"Romoli\",\nrole = c(\"cre\"),\nemail = \"carlo.romoli@ibacon.com\")\n)", "Description": "Allows performing forwards prediction for the General\nUnified Threshold model of Survival using compiled ode code.\nThis package was created to avoid dependency with the 'morse'\npackage that requires the installation of 'JAGS'. This package\nis based on functions from the 'morse' package v3.3.1: Virgile\nBaudrot, Sandrine Charles, Marie Laure Delignette-Muller,\nWandrille Duchemin, Benoit Goussen, Nils Kehrein, Guillaume\nKon-Kam-King, Christelle Lopes, Philippe Ruiz, Alexander Singer\nand Philippe Veber (2021)\n.", "License": "GPL (>= 3)", "Encoding": "UTF-8", "LazyData": "true", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.2", "URL": "https://github.com/bgoussen/odeGUTS", "BugReports": "https://github.com/bgoussen/odeGUTS/issues", "NeedsCompilation": "yes", "Config/pak/sysreqs": "libicu-dev", "Repository": "https://bgoussen.r-universe.dev", "Date/Publication": "2025-10-28 13:29:47 UTC", "RemoteUrl": "https://github.com/bgoussen/odeguts", "RemoteRef": "HEAD", "RemoteSha": "4851a0fcbe9a2aad0e2448555e66fa8b5abe0106", "Packaged": { "Date": "2026-09-20 06:54:53 UTC", "User": "root" }, "Author": "Benoit Goussen [aut] (ORCID: ),\nCarlo Romoli [cre]", "Maintainer": "Carlo Romoli ", "_user": "bgoussen", "_type": "src", "_file": "odeGUTS_1.1.0.tar.gz", "_fileid": "https://r2.ropensci.org/a81c980b93e7506fd09f36f8e373509c0a656d26ff571d521c24bd3fc9ad6f7c", "_filesize": 150982, "_sha256": "a81c980b93e7506fd09f36f8e373509c0a656d26ff571d521c24bd3fc9ad6f7c", "_expires": "2026-12-29T07:01:13.000Z", "_created": "2026-09-20T06:54:53.000Z", "_published": "2026-09-20T07:01:14.843Z", "_jobs": [ { "job": 106037535169, "time": 156, "config": "linux-devel-arm64", "r": "4.7.0", "check": "OK", "artifact": "10599719428" }, { "job": 106037535195, "time": 186, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "10599709515" }, { "job": 106037535200, "time": 114, "config": "linux-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "10600114292" }, { "job": 106037535141, "time": 155, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "10600523270" }, { "job": 106037535178, "time": 157, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "10599954564" }, { "job": 106037535163, "time": 224, "config": "macos-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "10600620569" }, { "job": 106037535159, "time": 119, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "10600368912" }, { "job": 106037535190, "time": 171, "config": "macos-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "10599889764" }, { "job": 106037192189, "time": 179, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "10600580714" }, { "job": 106037535114, "time": 121, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "10600114295" }, { "job": 106037535161, "time": 341, "config": "windows-devel-arm64", "r": "4.7.0", "check": "OK", "artifact": "10599984608" }, { "job": 106037535205, "time": 113, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "10600244035" }, { "job": 106037535238, "time": 72, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "10599843932" }, { "job": 106037535208, "time": 318, "config": "windows-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "10600314034" }, { "job": 106037535172, "time": 72, "config": "windows-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "10599999357" } ], "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/bgoussen/actions/runs/35495327837", "_status": "success", "_upstream": "https://github.com/bgoussen/odeguts", "_commit": { "id": "4851a0fcbe9a2aad0e2448555e66fa8b5abe0106", "author": "Benoit Goussen ", "committer": "GitHub ", "message": "Merge pull request #5 from bgoussen/dev\n\nDev", "time": 1761658187 }, "_maintainer": { "name": "Carlo Romoli", "email": "carlo.romoli@ibacon.com", "login": "carlor87", "description": "Astrophysicist now involved in biological modelling", "uuid": 12234932 }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 2.10", "role": "Depends" }, { "package": "deSolve", "role": "Imports" }, { "package": "magrittr", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "dplyr", "role": "Imports" }, { "package": "zoo", "role": "Imports" }, { "package": "tidyr", "role": "Imports" }, { "package": "morse", "role": "Suggests" } ], "_owner": "bgoussen", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-44", "n": 1 } ], "_tags": [ { "name": "v1.1.0", "date": "2025-10-29" } ], "_stars": 2, "_contributors": [ { "user": "bgoussen", "count": 39, "uuid": 13965085 } ], "_userbio": { "uuid": 13965085, "type": "user", "name": "Benoit Goussen", "followers": 5 }, "_downloads": { "count": 285, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/odeGUTS" }, "_devurl": "https://github.com/bgoussen/odeguts", "_searchresults": 2, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/NEWS.html", "extra/NEWS.txt", "extra/odeGUTS.html", "extra/readme.html", "extra/readme.md" ], "_homeurl": "https://github.com/bgoussen/odeguts", "_realowner": "bgoussen", "_cranurl": true, "_releases": [ { "version": "1.0.0", "date": "2021-08-13" }, { "version": "1.0.1", "date": "2021-09-10" }, { "version": "1.0.2", "date": "2023-04-30" }, { "version": "1.0.3", "date": "2024-10-04" }, { "version": "1.1.0", "date": "2025-11-05" } ], "_exports": [ "%>%", "predict_Nsurv_check", "predict_Nsurv_ode", "predict_ode" ], "_datasets": [ { "name": "fit_odeGUTS", "title": "Model calibration results for a GUTS-SD theoretical species exposed to a compound.", "object": "fit_odeGUTS", "class": [ "survFit" ], "fields": [], "table": false, "tojson": false } ], "_help": [ { "page": "fit_odeGUTS", "title": "Model calibration results for a GUTS-SD theoretical species exposed to a compound.", "topics": [ "fit_odeGUTS" ] }, { "page": "predict_check", "title": "Checking goodness-of-fit method for 'survFitPredict' and 'survFitPredict_Nsurv' objects", "topics": [ "predict_Nsurv_check", "predict_Nsurv_check.survFitPredict_Nsurv" ] }, { "page": "predict", "title": "Predict method for 'survFit' objects", "topics": [ "predict_Nsurv_ode", "predict_Nsurv_ode.survFit", "predict_ode", "predict_ode.survFit" ] } ], "_readme": "https://github.com/bgoussen/odeguts/raw/HEAD/README.md", "_rundeps": [ "cli", "cpp11", "deSolve", "dplyr", "generics", "glue", "lattice", "lifecycle", "magrittr", "pillar", "pkgconfig", "purrr", "R6", "rlang", "stringi", "stringr", "tibble", "tidyr", "tidyselect", "utf8", "vctrs", "withr", "zoo" ], "_score": 3, "_indexed": true, "_nocasepkg": "odeguts", "_universes": [ "bgoussen", "carlor87" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.1.0", "date": "2026-09-20T06:57:36.000Z", "distro": "resolute", "arch": "aarch64", "commit": "4851a0fcbe9a2aad0e2448555e66fa8b5abe0106", "fileid": "https://r2.ropensci.org/6a9a8810afe5022ec73f0999eebf000df28b9c03767844a877bddae20bc824c3", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bgoussen/actions/runs/35495327837" }, { "r": "4.7.0", "os": "linux", "version": "1.1.0", "date": "2026-09-20T06:58:00.000Z", "distro": "resolute", "arch": "x86_64", "commit": "4851a0fcbe9a2aad0e2448555e66fa8b5abe0106", "fileid": "https://r2.ropensci.org/353daaf073745832e49468fd212172039ecadd22cb691ed22b71a80c9d24c4d7", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bgoussen/actions/runs/35495327837" }, { "r": "4.6.1", "os": "linux", "version": "1.1.0", "date": "2026-09-20T06:56:58.000Z", "distro": "resolute", "arch": "aarch64", "commit": "4851a0fcbe9a2aad0e2448555e66fa8b5abe0106", "fileid": "https://r2.ropensci.org/124693504ad927ce856062662515f8dbfd5ec36ee89f3f86a83e9e8fad095540", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bgoussen/actions/runs/35495327837" }, { "r": "4.6.1", "os": "linux", "version": "1.1.0", "date": "2026-09-20T06:57:33.000Z", "distro": "resolute", "arch": "x86_64", "commit": "4851a0fcbe9a2aad0e2448555e66fa8b5abe0106", "fileid": "https://r2.ropensci.org/b23f544be8bd9149accd5ebe9a05f7b9291177fdc4c423470b3a873c174fb70a", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bgoussen/actions/runs/35495327837" }, { "r": "4.5.3", "os": "mac", "version": "1.1.0", "date": "2026-09-20T06:57:01.000Z", "arch": "aarch64", "commit": "4851a0fcbe9a2aad0e2448555e66fa8b5abe0106", "fileid": "https://r2.ropensci.org/032781faff7ce140809af20eaa66de9724782cfcb08cff0c42d1c31d28c38a8f", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bgoussen/actions/runs/35495327837" }, { "r": "4.5.3", "os": "mac", "version": "1.1.0", "date": "2026-09-20T06:58:08.000Z", "arch": "x86_64", "commit": "4851a0fcbe9a2aad0e2448555e66fa8b5abe0106", "fileid": "https://r2.ropensci.org/8b706e9141e609a0ca9e234b1af5c56175193e90256fc789bf99904402be2548", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bgoussen/actions/runs/35495327837" }, { "r": "4.6.1", "os": "mac", "version": "1.1.0", "date": "2026-09-20T06:56:42.000Z", "arch": "aarch64", "commit": "4851a0fcbe9a2aad0e2448555e66fa8b5abe0106", "fileid": "https://r2.ropensci.org/b9334ba05b3bafc620b57bdaf07ab1fc7b9253bb04d9642a9d304e6cd24bca65", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bgoussen/actions/runs/35495327837" }, { "r": "4.6.1", "os": "mac", "version": "1.1.0", "date": "2026-09-20T06:57:24.000Z", "arch": "x86_64", "commit": "4851a0fcbe9a2aad0e2448555e66fa8b5abe0106", "fileid": "https://r2.ropensci.org/0d7b548cb9871d4cf6e0027f98b8a844ab324839c4eaa0b6be15a57637027e8c", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bgoussen/actions/runs/35495327837" }, { "r": "4.6.0", "os": "wasm", "version": "1.1.0", "date": "2026-09-20T06:57:09.000Z", "arch": "emscripten", "commit": "4851a0fcbe9a2aad0e2448555e66fa8b5abe0106", "fileid": "https://r2.ropensci.org/5513cf5159419aec4692f5d0a0ab2bc8ad6e6a87239bc538a89870251971402e", "status": "success", "buildurl": "https://github.com/r-universe/bgoussen/actions/runs/35495327837" }, { "r": "4.7.0", "os": "win", "version": "1.1.0", "date": "2026-09-20T07:00:07.000Z", "arch": "aarch64", "commit": "4851a0fcbe9a2aad0e2448555e66fa8b5abe0106", "fileid": "https://r2.ropensci.org/5a03fb9c3505e4179e2369e6e01598123477eda30f07b50d8e7dc1d2020c72b6", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bgoussen/actions/runs/35495327837" }, { "r": "4.7.0", "os": "win", "version": "1.1.0", "date": "2026-09-20T06:56:08.000Z", "arch": "x86_64", "commit": "4851a0fcbe9a2aad0e2448555e66fa8b5abe0106", "fileid": "https://r2.ropensci.org/979c60a4ed833929e162d68fa28df5a08c8102f1d7809900d5c2e2edd9449b18", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bgoussen/actions/runs/35495327837" }, { "r": "4.5.3", "os": "win", "version": "1.1.0", "date": "2026-09-20T06:55:59.000Z", "arch": "x86_64", "commit": "4851a0fcbe9a2aad0e2448555e66fa8b5abe0106", "fileid": "https://r2.ropensci.org/98f282e46633ffb4ab3f51b2e7f9bb0f9d24e8cca070fe0c0ee2bd48facb090b", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bgoussen/actions/runs/35495327837" }, { "r": "4.6.1", "os": "win", "version": "1.1.0", "date": "2026-09-20T06:59:33.000Z", "arch": "aarch64", "commit": "4851a0fcbe9a2aad0e2448555e66fa8b5abe0106", "fileid": "https://r2.ropensci.org/806bc24708ea5c1bc64c987a867fdb507b18857667f34d0bd70942bf8e4b7909", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bgoussen/actions/runs/35495327837" }, { "r": "4.6.1", "os": "win", "version": "1.1.0", "date": "2026-09-20T06:55:58.000Z", "arch": "x86_64", "commit": "4851a0fcbe9a2aad0e2448555e66fa8b5abe0106", "fileid": "https://r2.ropensci.org/0a74d8964f660ec97d0651ab1f55455623a6a5f95e38d2afabca4adf63cef352", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bgoussen/actions/runs/35495327837" } ] }